SNP Detail For rs2483058
1.Mapping Information
Human SNP ID rs2483058
Human chromosome chr1
Human SNP position 206453482
Pig chromosome chr9
Pig SNP position 73354324
2.Annotation Information
PubMed ID23031429
JournalTwin Res Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23031429
StudyA genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.
Disease/TraitCholesterol and Triglycerides
Initial sample1,720 European ancestry monozygotic twins
Replication sample1,261 European ancestry monozygotic twins
Region1q32.1
Chromosome idchr1
Chromosome position206453482
Reported geneSRGAP2
Mapped geneSRGAP2
Upstream gene id
Downstream gene id
SNP gene ids23380
Upstream gene distance
Downstream gene distance
SNP risk allelers2483058-C
SNPsrs2483058
Merged0
SNP id current2483058
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text(HDL)
Or beta0.203
%95 Ci[0.13-0.28] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST001704