Human SNP ID | rs2483058 |
---|---|
Human chromosome | chr1 |
Human SNP position | 206453482 |
Pig chromosome | chr9 |
Pig SNP position | 73354324 |
PubMed ID | 23031429 |
---|---|
Journal | Twin Res Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23031429 |
Study | A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol. |
Disease/Trait | Cholesterol and Triglycerides |
Initial sample | 1,720 European ancestry monozygotic twins |
Replication sample | 1,261 European ancestry monozygotic twins |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 206453482 |
Reported gene | SRGAP2 |
Mapped gene | SRGAP2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23380 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2483058-C |
SNPs | rs2483058 |
Merged | 0 |
SNP id current | 2483058 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (HDL) |
Or beta | 0.203 |
%95 Ci | [0.13-0.28] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST001704 |