SNP Detail For rs2477686
1.Mapping Information
Human SNP ID rs2477686
Human chromosome chr1
Human SNP position 2461209
Pig chromosome chr6
Pig SNP position 58670177
2.Annotation Information
PubMed ID22197933
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22197933
StudyA genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.
Disease/TraitNon-obstructive azoospermia
Initial sample981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls
Replication sample1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls
Region1p36.32
Chromosome idchr1
Chromosome position2461209
Reported geneMMEL1, PEX10
Mapped genePLCH2
Upstream gene id
Downstream gene id
SNP gene ids9651
Upstream gene distance
Downstream gene distance
SNP risk allelers2477686-?
SNPsrs2477686
Merged0
SNP id current2477686
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000006
Pvalue mlog11.2218487496163
P value text
Or beta1.39
%95 Ci[1.26-1.52]
PlatformAffymetrix [587347]
CNVN
Mapped traitazoospermia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000279
Study accessionGCST001362