SNP Detail For rs2476847
1.Mapping Information
Human SNP ID rs2476847
Human chromosome chr6
Human SNP position 549390
Pig chromosome chr7
Pig SNP position 94245
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region6p25.3
Chromosome idchr6
Chromosome position549390
Reported geneEXOC2
Mapped geneEXOC2
Upstream gene id
Downstream gene id
SNP gene ids55770
Upstream gene distance
Downstream gene distance
SNP risk allelers2476847-?
SNPsrs2476847
Merged0
SNP id current2476847
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text(Psoriasis)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740