SNP Detail For rs2475335
1.Mapping Information
Human SNP ID rs2475335
Human chromosome chr9
Human SNP position 10260263
Pig chromosome chr1
Pig SNP position 236515801
2.Annotation Information
PubMed ID20522523
JournalBrain
Linkwww.ncbi.nlm.nih.gov/pubmed/20522523
StudyCommon genetic variation and susceptibility to partial epilepsies: a genome-wide association study.
Disease/TraitPartial epilepsies
Initial sampleUp to 3,445 European ancestry cases, 6,935 European ancestry controls
Replication sampleNA
Region9p23
Chromosome idchr9
Chromosome position10260263
Reported genePTPRD
Mapped genePTPRD
Upstream gene id
Downstream gene id
SNP gene ids5789
Upstream gene distance
Downstream gene distance
SNP risk allelers2475335-?
SNPsrs2475335
Merged0
SNP id current2475335
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [528745]
CNVN
Mapped traitpartial epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004263
Study accessionGCST000691