Human SNP ID | rs2472649 |
---|---|
Human chromosome | chr4 |
Human SNP position | 73991991 |
Pig chromosome | chr8 |
Pig SNP position | 74167633 |
PubMed ID | 23128233 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 12,924 European ancestry cases, 21,442 European ancestry controls |
Replication sample | 25,683 European ancestry cases, 17,015 European ancestry controls |
Region | 4q13.3 |
Chromosome id | chr4 |
Chromosome position | 73991991 |
Reported gene | CXCL3, IL8, CXCL6, PF4V1, CXCL5, PF4, CXCL2, CXCL1 |
Mapped gene | PPBP - CXCL5 |
Upstream gene id | 5473 |
Downstream gene id | 6374 |
SNP gene ids | |
Upstream gene distance | 3801 |
Downstream gene distance | 3651 |
SNP risk allele | rs2472649-G |
SNPs | rs2472649 |
Merged | 0 |
SNP id current | 2472649 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.824 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.095 |
%95 Ci | [1.046-1.146] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST001725 |