SNP Detail For rs2472649
1.Mapping Information
Human SNP ID rs2472649
Human chromosome chr4
Human SNP position 73991991
Pig chromosome chr8
Pig SNP position 74167633
2.Annotation Information
PubMed ID23128233
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23128233
StudyHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Disease/TraitInflammatory bowel disease
Initial sample12,924 European ancestry cases, 21,442 European ancestry controls
Replication sample25,683 European ancestry cases, 17,015 European ancestry controls
Region4q13.3
Chromosome idchr4
Chromosome position73991991
Reported geneCXCL3, IL8, CXCL6, PF4V1, CXCL5, PF4, CXCL2, CXCL1
Mapped genePPBP - CXCL5
Upstream gene id5473
Downstream gene id6374
SNP gene ids
Upstream gene distance3801
Downstream gene distance3651
SNP risk allelers2472649-G
SNPsrs2472649
Merged0
SNP id current2472649
Contextupstream_gene_variant
Intergenic1
Allele frequency0.824
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.095
%95 Ci[1.046-1.146]
PlatformAffymetrix, Illumina [1230000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST001725