Human SNP ID | rs246196 |
---|---|
Human chromosome | chr16 |
Human SNP position | 58540349 |
Pig chromosome | chr6 |
Pig SNP position | 18456594 |
PubMed ID | 24952745 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24952745 |
Study | Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. |
Disease/Trait | QT interval |
Initial sample | Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals |
Replication sample | Up to 33,316 European ancestry individuals |
Region | 16q21 |
Chromosome id | chr16 |
Chromosome position | 58540349 |
Reported gene | CNOT1 |
Mapped gene | CNOT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23019 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs246196-C |
SNPs | rs246196 |
Merged | 0 |
SNP id current | 246196 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.259 |
P value | 2E-57 |
Pvalue mlog | 56.698970004336 |
P value text | |
Or beta | 1.73 |
%95 Ci | [1.51-1.95] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST002500 |