SNP Detail For rs2457996
1.Mapping Information
Human SNP ID rs2457996
Human chromosome chr4
Human SNP position 73990818
Pig chromosome chr8
Pig SNP position 74170040
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitUlcerative colitis
Initial sample6,968 European ancestry cases, 20,464 European ancestry controls
Replication sample10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region4q13.3
Chromosome idchr4
Chromosome position73990818
Reported geneNR
Mapped genePPBP - CXCL5
Upstream gene id5473
Downstream gene id6374
SNP gene ids
Upstream gene distance2628
Downstream gene distance4824
SNP risk allelers2457996-A
SNPsrs2457996
Merged
SNP id current2457996
Contextupstream_gene_variant
Intergenic1
Allele frequency0.89
P value0.0000004
Pvalue mlog6.39794000867203
P value text(EA)
Or beta1.1094414
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST003045