Human SNP ID | rs2456930 |
---|---|
Human chromosome | chr15 |
Human SNP position | 62395140 |
Pig chromosome | chr1 |
Pig SNP position | 121028570 |
PubMed ID | 20197096 |
---|---|
Journal | Neuroimage |
Link | www.ncbi.nlm.nih.gov/pubmed/20197096 |
Study | Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer__s disease. |
Disease/Trait | Brain structure (temporal lobe volume) |
Initial sample | 173 European ancestry Alzheimer__s disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls |
Replication sample | NA |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 62395140 |
Reported gene | intergenic |
Mapped gene | TLN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83660 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2456930-G |
SNPs | rs2456930 |
Merged | 0 |
SNP id current | 2456930 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 3843.9 |
%95 Ci | [NR] unit increase |
Platform | Illumina [546314] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST000614 |