SNP Detail For rs2456930
1.Mapping Information
Human SNP ID rs2456930
Human chromosome chr15
Human SNP position 62395140
Pig chromosome chr1
Pig SNP position 121028570
2.Annotation Information
PubMed ID20197096
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/20197096
StudyGenome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer__s disease.
Disease/TraitBrain structure (temporal lobe volume)
Initial sample173 European ancestry Alzheimer__s disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls
Replication sampleNA
Region15q22.2
Chromosome idchr15
Chromosome position62395140
Reported geneintergenic
Mapped geneTLN2
Upstream gene id
Downstream gene id
SNP gene ids83660
Upstream gene distance
Downstream gene distance
SNP risk allelers2456930-G
SNPsrs2456930
Merged0
SNP id current2456930
Contextintron_variant
Intergenic0
Allele frequency0.38
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta3843.9
%95 Ci[NR] unit increase
PlatformIllumina [546314]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000614