SNP Detail For rs2456568
1.Mapping Information
Human SNP ID rs2456568
Human chromosome chr11
Human SNP position 93958166
Pig chromosome chr9
Pig SNP position 29938484
2.Annotation Information
PubMed ID25897834
JournalTransl Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25897834
StudyThe International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.
Disease/TraitResponse to serotonin reuptake inhibitors in major depressive disorder
Initial sample298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases
Replication sampleNA
Region11q21
Chromosome idchr11
Chromosome position93958166
Reported geneHPRTP4
Mapped geneLOC101060084 - HEPHL1
Upstream gene id101060084
Downstream gene id341208
SNP gene ids
Upstream gene distance87240
Downstream gene distance63046
SNP risk allelers2456568-?
SNPsrs2456568
Merged0
SNP id current2456568
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000005
Pvalue mlog7.30102999566398
P value text(Response)
Or beta1.36
%95 Ci[NR]
PlatformIllumina [~ 7000000] (imputed)
CNVN
Mapped traitunipolar depression, response to selective serotonin reuptake inhibitor
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0005658
Study accessionGCST002868