Human SNP ID | rs2456568 |
---|---|
Human chromosome | chr11 |
Human SNP position | 93958166 |
Pig chromosome | chr9 |
Pig SNP position | 29938484 |
PubMed ID | 25897834 |
---|---|
Journal | Transl Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25897834 |
Study | The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response. |
Disease/Trait | Response to serotonin reuptake inhibitors in major depressive disorder |
Initial sample | 298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases |
Replication sample | NA |
Region | 11q21 |
Chromosome id | chr11 |
Chromosome position | 93958166 |
Reported gene | HPRTP4 |
Mapped gene | LOC101060084 - HEPHL1 |
Upstream gene id | 101060084 |
Downstream gene id | 341208 |
SNP gene ids | |
Upstream gene distance | 87240 |
Downstream gene distance | 63046 |
SNP risk allele | rs2456568-? |
SNPs | rs2456568 |
Merged | 0 |
SNP id current | 2456568 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (Response) |
Or beta | 1.36 |
%95 Ci | [NR] |
Platform | Illumina [~ 7000000] (imputed) |
CNV | N |
Mapped trait | unipolar depression, response to selective serotonin reuptake inhibitor |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0005658 |
Study accession | GCST002868 |