SNP Detail For rs2444240
1.Mapping Information
Human SNP ID rs2444240
Human chromosome chr11
Human SNP position 120169734
Pig chromosome chr9
Pig SNP position 52326311
2.Annotation Information
PubMed ID22969067
JournalInvest Ophthalmol Vis Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/22969067
StudyGenetic variants near PDGFRA are associated with corneal curvature in Australians.
Disease/TraitCorneal curvature
Initial sample1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position120169734
Reported geneTRIM29
Mapped geneTRIM29, LOC729173
Upstream gene id
Downstream gene id
SNP gene ids23650, 729173
Upstream gene distance
Downstream gene distance
SNP risk allelers2444240-T
SNPsrs2444240
Merged0
SNP id current2444240
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.0365
%95 Ci[0.022-0.050] mm decrease
PlatformIllumina [1704858] (imputed)
CNVN
Mapped traitcorneal topography
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004345
Study accessionGCST001680