Human SNP ID | rs2444240 |
---|---|
Human chromosome | chr11 |
Human SNP position | 120169734 |
Pig chromosome | chr9 |
Pig SNP position | 52326311 |
PubMed ID | 22969067 |
---|---|
Journal | Invest Ophthalmol Vis Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/22969067 |
Study | Genetic variants near PDGFRA are associated with corneal curvature in Australians. |
Disease/Trait | Corneal curvature |
Initial sample | 1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals |
Replication sample | NA |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 120169734 |
Reported gene | TRIM29 |
Mapped gene | TRIM29, LOC729173 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23650, 729173 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2444240-T |
SNPs | rs2444240 |
Merged | 0 |
SNP id current | 2444240 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 0.0365 |
%95 Ci | [0.022-0.050] mm decrease |
Platform | Illumina [1704858] (imputed) |
CNV | N |
Mapped trait | corneal topography |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004345 |
Study accession | GCST001680 |