SNP Detail For rs243088
1.Mapping Information
Human SNP ID rs243088
Human chromosome chr2
Human SNP position 60341610
Pig chromosome chr3
Pig SNP position 85494490
2.Annotation Information
PubMed ID24509480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24509480
StudyGenome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Disease/TraitType 2 diabetes
Initial sample12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance
Replication sample21,491 European ancestry cases, 55,647 European ancestry controls
Region2p16.1
Chromosome idchr2
Chromosome position60341610
Reported geneBCL11A
Mapped geneLOC105374756
Upstream gene id
Downstream gene id
SNP gene ids105374756
Upstream gene distance
Downstream gene distance
SNP risk allelers243088-T
SNPsrs243088
Merged0
SNP id current243088
Contextintergenic_variant
Intergenic0
Allele frequency0.46
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.09
%95 Ci[1.04-1.13]
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002352