SNP Detail For rs2430457
1.Mapping Information
Human SNP ID rs2430457
Human chromosome chr6
Human SNP position 107339442
Pig chromosome chr1
Pig SNP position 82716344
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position107339442
Reported geneNR
Mapped genePDSS2
Upstream gene id
Downstream gene id
SNP gene ids57107
Upstream gene distance
Downstream gene distance
SNP risk allelers2430457-G
SNPsrs2430457
Merged0
SNP id current2430457
Contextintron_variant
Intergenic0
Allele frequency0.00697800000000004
P value0.000005
Pvalue mlog5.30102999566398
P value text(IGP31)
Or beta2.6041
%95 Ci[1.48-3.73] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848