SNP Detail For rs242557
1.Mapping Information
Human SNP ID rs242557
Human chromosome chr17
Human SNP position 45942346
Pig chromosome chr12
Pig SNP position 17190711
2.Annotation Information
PubMed ID21685912
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21685912
StudyIdentification of common variants influencing risk of the tauopathy progressive supranuclear palsy.
Disease/TraitProgressive supranuclear palsy
Initial sample1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls
Replication sample1,051 European ancestry cases, 3,560 European ancestry controls
Region17q21.31
Chromosome idchr17
Chromosome position45942346
Reported geneMAPT
Mapped geneMAPT
Upstream gene id
Downstream gene id
SNP gene ids4137
Upstream gene distance
Downstream gene distance
SNP risk allelers242557-?
SNPsrs242557
Merged0
SNP id current242557
Contextintron_variant
Intergenic0
Allele frequency0.35
P value0.000000000000000009
Pvalue mlog17.0457574905606
P value text(controlling for rs8070723)
Or beta1.43
%95 Ci[1.32-1.54]
PlatformIllumina [531451]
CNVN
Mapped traitProgressive supranuclear palsy
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_683
Study accessionGCST001116