Human SNP ID | rs242557 |
---|---|
Human chromosome | chr17 |
Human SNP position | 45942346 |
Pig chromosome | chr12 |
Pig SNP position | 17190711 |
PubMed ID | 21685912 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21685912 |
Study | Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy. |
Disease/Trait | Progressive supranuclear palsy |
Initial sample | 1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls |
Replication sample | 1,051 European ancestry cases, 3,560 European ancestry controls |
Region | 17q21.31 |
Chromosome id | chr17 |
Chromosome position | 45942346 |
Reported gene | MAPT |
Mapped gene | MAPT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4137 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs242557-? |
SNPs | rs242557 |
Merged | 0 |
SNP id current | 242557 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 0.000000000000000009 |
Pvalue mlog | 17.0457574905606 |
P value text | (controlling for rs8070723) |
Or beta | 1.43 |
%95 Ci | [1.32-1.54] |
Platform | Illumina [531451] |
CNV | N |
Mapped trait | Progressive supranuclear palsy |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_683 |
Study accession | GCST001116 |