SNP Detail For rs2424460
1.Mapping Information
Human SNP ID rs2424460
Human chromosome chr20
Human SNP position 22760259
Pig chromosome chr17
Pig SNP position 34154080
2.Annotation Information
PubMed ID24665060
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24665060
StudyGenome-wide association study of smoking behaviours among Bangladeshi adults.
Disease/TraitAge of smoking initiation
Initial sample1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females
Replication sampleNA
Region20p11.21
Chromosome idchr20
Chromosome position22760259
Reported geneNR
Mapped geneLOC105377060 - LOC105372567
Upstream gene id105377060
Downstream gene id105372567
SNP gene ids
Upstream gene distance13286
Downstream gene distance12554
SNP risk allelers2424460-?
SNPsrs2424460
Merged0
SNP id current2424460
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [1211988] (imputed)
CNVN
Mapped traitage at onset, smoking initiation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0005670
Study accessionGCST002394