SNP Detail For rs2423942
1.Mapping Information
Human SNP ID rs2423942
Human chromosome chr20
Human SNP position 15342636
Pig chromosome chr17
Pig SNP position 27104544
2.Annotation Information
PubMed ID22633400
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22633400
StudyGenome-wide association study identifies candidate genes for male fertility traits in humans.
Disease/TraitMale fertility
Initial sample269 Hutterite males
Replication sampleNA
Region20p12.1
Chromosome idchr20
Chromosome position15342636
Reported geneMACROD2
Mapped geneMACROD2
Upstream gene id
Downstream gene id
SNP gene ids140733
Upstream gene distance
Downstream gene distance
SNP risk allelers2423942-T
SNPsrs2423942
Merged0
SNP id current2423942
Contextintron_variant
Intergenic0
Allele frequency0.33
P value0.000009
Pvalue mlog5.04575749056067
P value text(Family size, recessive model)
Or beta
%95 Ci
PlatformAffymetrix [248210]
CNVN
Mapped traitmale fertility, family size
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004803, http://www.ebi.ac.uk/efo/EFO_0004802
Study accessionGCST001540