Human SNP ID | rs2423942 |
---|---|
Human chromosome | chr20 |
Human SNP position | 15342636 |
Pig chromosome | chr17 |
Pig SNP position | 27104544 |
PubMed ID | 22633400 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22633400 |
Study | Genome-wide association study identifies candidate genes for male fertility traits in humans. |
Disease/Trait | Male fertility |
Initial sample | 269 Hutterite males |
Replication sample | NA |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 15342636 |
Reported gene | MACROD2 |
Mapped gene | MACROD2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 140733 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2423942-T |
SNPs | rs2423942 |
Merged | 0 |
SNP id current | 2423942 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Family size, recessive model) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [248210] |
CNV | N |
Mapped trait | male fertility, family size |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004803, http://www.ebi.ac.uk/efo/EFO_0004802 |
Study accession | GCST001540 |