SNP Detail For rs2420903
1.Mapping Information
Human SNP ID rs2420903
Human chromosome chr10
Human SNP position 121042993
Pig chromosome chr14
Pig SNP position 142378369
2.Annotation Information
PubMed ID26039976
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26039976
StudyGenome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.
Disease/TraitHIV-1 viral setpoint
Initial sample326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases
Replication sampleNA
Region10q26.12
Chromosome idchr10
Chromosome position121042993
Reported geneBRWD2, LOC100129699
Mapped geneLOC105378521
Upstream gene id
Downstream gene id
SNP gene ids105378521
Upstream gene distance
Downstream gene distance
SNP risk allelers2420903-A
SNPsrs2420903
Merged
SNP id current2420903
Contextintergenic_variant
Intergenic0
Allele frequency0.3691
P value0.000006
Pvalue mlog5.22184874961635
P value text(Yun)
Or beta0.4386
%95 Ciunit decrease
PlatformIllumina [up to 528294]
CNVN
Mapped traitHIV-1 infection, HIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST002976