Human SNP ID | rs2420903 |
---|---|
Human chromosome | chr10 |
Human SNP position | 121042993 |
Pig chromosome | chr14 |
Pig SNP position | 142378369 |
PubMed ID | 26039976 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26039976 |
Study | Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations. |
Disease/Trait | HIV-1 viral setpoint |
Initial sample | 326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases |
Replication sample | NA |
Region | 10q26.12 |
Chromosome id | chr10 |
Chromosome position | 121042993 |
Reported gene | BRWD2, LOC100129699 |
Mapped gene | LOC105378521 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105378521 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2420903-A |
SNPs | rs2420903 |
Merged | |
SNP id current | 2420903 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.3691 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Yun) |
Or beta | 0.4386 |
%95 Ci | unit decrease |
Platform | Illumina [up to 528294] |
CNV | N |
Mapped trait | HIV-1 infection, HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST002976 |