SNP Detail For rs2414739
1.Mapping Information
Human SNP ID rs2414739
Human chromosome chr15
Human SNP position 61701935
Pig chromosome chr1
Pig SNP position 121680549
2.Annotation Information
PubMed ID25064009
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25064009
StudyLarge-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson__s disease.
Disease/TraitParkinson__s disease
Initial sample13,708 European ancestry cases, 95,282 European ancestry controls
Replication sample5,353 European ancestry cases, 5,551 European ancestry controls
Region15q22.2
Chromosome idchr15
Chromosome position61701935
Reported geneVPS13C
Mapped geneLOC101928850 - LOC100506530
Upstream gene id101928850
Downstream gene id100506530
SNP gene ids
Upstream gene distance96694
Downstream gene distance27915
SNP risk allelers2414739-A
SNPsrs2414739
Merged0
SNP id current2414739
Contextintron_variant
Intergenic1
Allele frequency0.734
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.113
%95 Ci[1.08-1.14]
PlatformIllumina [7893274] (imputed)
CNVN
Mapped traitParkinson__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508
Study accessionGCST002544