Human SNP ID | rs2414739 |
---|---|
Human chromosome | chr15 |
Human SNP position | 61701935 |
Pig chromosome | chr1 |
Pig SNP position | 121680549 |
PubMed ID | 25064009 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25064009 |
Study | Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson__s disease. |
Disease/Trait | Parkinson__s disease |
Initial sample | 13,708 European ancestry cases, 95,282 European ancestry controls |
Replication sample | 5,353 European ancestry cases, 5,551 European ancestry controls |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 61701935 |
Reported gene | VPS13C |
Mapped gene | LOC101928850 - LOC100506530 |
Upstream gene id | 101928850 |
Downstream gene id | 100506530 |
SNP gene ids | |
Upstream gene distance | 96694 |
Downstream gene distance | 27915 |
SNP risk allele | rs2414739-A |
SNPs | rs2414739 |
Merged | 0 |
SNP id current | 2414739 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.734 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.113 |
%95 Ci | [1.08-1.14] |
Platform | Illumina [7893274] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST002544 |