Human SNP ID | rs2412459 |
---|---|
Human chromosome | chr15 |
Human SNP position | 40003758 |
Pig chromosome | chr1 |
Pig SNP position | 146437554 |
PubMed ID | 24751813 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/24751813 |
Study | Genome-wide association study supports the role of the immunological system and of the neurodevelopmental processes in response to haloperidol treatment. |
Disease/Trait | Response to haloperidol in psychosis |
Initial sample | 96 European ancestry cases |
Replication sample | NA |
Region | 15q15.1 |
Chromosome id | chr15 |
Chromosome position | 40003758 |
Reported gene | EIF2AK4 |
Mapped gene | EIF2AK4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 440275 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2412459-C |
SNPs | rs2412459 |
Merged | 0 |
SNP id current | 2412459 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.218 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Total PANSS scores) |
Or beta | |
%95 Ci | |
Platform | Illumina [1080870] (imputed) |
CNV | N |
Mapped trait | psychosis, response to haloperidol |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005407, http://purl.obolibrary.org/obo/GO_1905119 |
Study accession | GCST002465 |