Human SNP ID | rs241215 |
---|---|
Human chromosome | chr1 |
Human SNP position | 4544044 |
Pig chromosome | chr6 |
Pig SNP position | 60581273 |
PubMed ID | 26394188 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26394188 |
Study | Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls. |
Disease/Trait | Adolescent idiopathic scoliosis |
Initial sample | 960 Han Chinese ancestry cases, 1,499 Han Chinese ancestry controls |
Replication sample | 3,316 Han Chinese ancestry cases, 4,516 Han Chinese ancestry controls |
Region | 1p36.32 |
Chromosome id | chr1 |
Chromosome position | 4544044 |
Reported gene | AJAP1 |
Mapped gene | LOC105376674 - LOC105376679 |
Upstream gene id | 105376674 |
Downstream gene id | 105376679 |
SNP gene ids | |
Upstream gene distance | 100361 |
Downstream gene distance | 27470 |
SNP risk allele | rs241215-? |
SNPs | rs241215 |
Merged | |
SNP id current | 241215 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.675 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.12-1.28] |
Platform | Affymetrix [516220] |
CNV | N |
Mapped trait | adolescent idiopathic scoliosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005423 |
Study accession | GCST003128 |