Human SNP ID | rs2405522 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132406004 |
Pig chromosome | chr2 |
Pig SNP position | 140098990 |
PubMed ID | 24816252 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132406004 |
Reported gene | SLC22A4 |
Mapped gene | SLC22A5 - C5orf56 |
Upstream gene id | 6584 |
Downstream gene id | 441108 |
SNP gene ids | |
Upstream gene distance | 10390 |
Downstream gene distance | 4769 |
SNP risk allele | rs2405522-A |
SNPs | rs2405522 |
Merged | 0 |
SNP id current | 2405522 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 4E-29 |
Pvalue mlog | 28.397940008672 |
P value text | (tryptophan betaine ) |
Or beta | 0.126 |
%95 Ci | [0.1-0.15] unit decrease |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |