SNP Detail For rs2405522
1.Mapping Information
Human SNP ID rs2405522
Human chromosome chr5
Human SNP position 132406004
Pig chromosome chr2
Pig SNP position 140098990
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132406004
Reported geneSLC22A4
Mapped geneSLC22A5 - C5orf56
Upstream gene id6584
Downstream gene id441108
SNP gene ids
Upstream gene distance10390
Downstream gene distance4769
SNP risk allelers2405522-A
SNPsrs2405522
Merged0
SNP id current2405522
Contextupstream_gene_variant
Intergenic1
Allele frequency0.17
P value4E-29
Pvalue mlog28.397940008672
P value text(tryptophan betaine )
Or beta0.126
%95 Ci[0.1-0.15] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443