SNP Detail For rs2398162
1.Mapping Information
Human SNP ID rs2398162
Human chromosome chr15
Human SNP position 96287321
Pig chromosome chr7
Pig SNP position 89013226
2.Annotation Information
PubMed ID17554300
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17554300
StudyGenome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
Disease/TraitHypertension
Initial sample1,952 European ancestry cases, 2,938 European ancestry controls
Replication sampleNA
Region15q26.2
Chromosome idchr15
Chromosome position96287321
Reported geneintergenic
Mapped geneNR2F2-AS1
Upstream gene id
Downstream gene id
SNP gene ids644192
Upstream gene distance
Downstream gene distance
SNP risk allelers2398162-A
SNPsrs2398162
Merged0
SNP id current2398162
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.74
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.31
%95 Ci[1.03-1.67]
PlatformAffymetrix [469557]
CNVN
Mapped traithypertension
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000537
Study accessionGCST000041