SNP Detail For rs2392780
1.Mapping Information
Human SNP ID rs2392780
Human chromosome chr8
Human SNP position 127375779
Pig chromosome chr4
Pig SNP position 13017603
2.Annotation Information
PubMed ID24493630
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24493630
StudyA genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
Disease/TraitBreast cancer (early onset)
Initial sample3,523 European ancestry young female cases, 2,702 European ancestry young female controls
Replication sample3,470 European ancestry young female cases, 5,475 European ancestry young female controls
Region8q24.21
Chromosome idchr8
Chromosome position127375779
Reported geneintergenic
Mapped geneCASC21, CASC8
Upstream gene id
Downstream gene id
SNP gene ids103021164, 727677
Upstream gene distance
Downstream gene distance
SNP risk allelers2392780-?
SNPsrs2392780
Merged0
SNP id current2392780
Contextintron_variant
Intergenic0
Allele frequency0.6
P value0.00000001
Pvalue mlog8
P value text
Or beta1.15
%95 Ci[1.10-1.20]
PlatformIllumina [1265548] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002346