Human SNP ID | rs2392510 |
---|---|
Human chromosome | chr7 |
Human SNP position | 37706967 |
Pig chromosome | chr18 |
Pig SNP position | 40291003 |
PubMed ID | 25672891 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25672891 |
Study | A Genome-wide Association Study of Periodontitis in a Japanese Population. |
Disease/Trait | Periodontitis |
Initial sample | 1,593 Japanese ancestry cases, 7,980 Japanese ancestry controls |
Replication sample | 1,167 Japanese ancestry cases, 7,178 Japanese ancestry controls |
Region | 7p14.1 |
Chromosome id | chr7 |
Chromosome position | 37706967 |
Reported gene | GPR141, NME8 |
Mapped gene | GPR141 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 353345 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2392510-T |
SNPs | rs2392510 |
Merged | 0 |
SNP id current | 2392510 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.59 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [597434] |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002781 |