Human SNP ID | rs2388896 |
---|---|
Human chromosome | chr10 |
Human SNP position | 8912261 |
Pig chromosome | chr10 |
Pig SNP position | 68904651 |
PubMed ID | 23297363 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23297363 |
Study | Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot. |
Disease/Trait | Tetralogy of Fallot |
Initial sample | 835 European ancestry cases, 5,159 European ancestry controls |
Replication sample | 798 European ancestry cases, 2,931 European ancestry controls |
Region | 10p14 |
Chromosome id | chr10 |
Chromosome position | 8912261 |
Reported gene | intergenic |
Mapped gene | LOC105376400 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376400 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2388896-G |
SNPs | rs2388896 |
Merged | 0 |
SNP id current | 2388896 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.599 |
P value | 0.00000009 |
Pvalue mlog | 7.04575749056067 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.15-1.43] |
Platform | Illumina [516131] |
CNV | N |
Mapped trait | tetralogy of fallot |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0001636 |
Study accession | GCST001807 |