SNP Detail For rs2388896
1.Mapping Information
Human SNP ID rs2388896
Human chromosome chr10
Human SNP position 8912261
Pig chromosome chr10
Pig SNP position 68904651
2.Annotation Information
PubMed ID23297363
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23297363
StudyGenome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.
Disease/TraitTetralogy of Fallot
Initial sample835 European ancestry cases, 5,159 European ancestry controls
Replication sample798 European ancestry cases, 2,931 European ancestry controls
Region10p14
Chromosome idchr10
Chromosome position8912261
Reported geneintergenic
Mapped geneLOC105376400
Upstream gene id
Downstream gene id
SNP gene ids105376400
Upstream gene distance
Downstream gene distance
SNP risk allelers2388896-G
SNPsrs2388896
Merged0
SNP id current2388896
Contextintron_variant
Intergenic0
Allele frequency0.599
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.28
%95 Ci[1.15-1.43]
PlatformIllumina [516131]
CNVN
Mapped traittetralogy of fallot
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0001636
Study accessionGCST001807