SNP Detail For rs2383393
1.Mapping Information
Human SNP ID rs2383393
Human chromosome chr4
Human SNP position 179743500
Pig chromosome chr15
Pig SNP position 48036628
2.Annotation Information
PubMed ID19851299
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/19851299
StudyLinkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.
Disease/TraitBody mass index
Initial sample1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals
Replication sampleNA
Region4q34.3
Chromosome idchr4
Chromosome position179743500
Reported geneNR
Mapped geneLOC105377563 - LOC105377564
Upstream gene id105377563
Downstream gene id105377564
SNP gene ids
Upstream gene distance926174
Downstream gene distance221359
SNP risk allelers2383393-G
SNPsrs2383393
Merged0
SNP id current2383393
Contextintergenic_variant
Intergenic1
Allele frequency0.63
P value0.000002
Pvalue mlog5.69897000433601
P value text(males)
Or beta0.1
%95 Ci[NR] kg increase
PlatformIllumina [318237]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST000512