SNP Detail For rs2381628
1.Mapping Information
Human SNP ID rs2381628
Human chromosome chr9
Human SNP position 7518656
Pig chromosome chr1
Pig SNP position 240016601
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region9p24.1
Chromosome idchr9
Chromosome position7518656
Reported geneNR
Mapped genePPIAP33
Upstream gene id
Downstream gene id
SNP gene ids392285
Upstream gene distance
Downstream gene distance
SNP risk allelers2381628-C
SNPsrs2381628
Merged0
SNP id current2381628
Contextintergenic_variant
Intergenic0
Allele frequency0.816537394303516
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP17)
Or beta0.1783
%95 Ci[0.1-0.26] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848