SNP Detail For rs237899
1.Mapping Information
Human SNP ID rs237899
Human chromosome chr3
Human SNP position 8766829
Pig chromosome chr13
Pig SNP position 72433419
2.Annotation Information
PubMed ID22064162
JournalPsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22064162
StudyGenome-wide association study of comorbid depressive syndrome and alcohol dependence.
Disease/TraitDepression and alcohol dependence
Initial sample467 European ancestry cases, 407 European ancestry controls
Replication sampleNA
Region3p25.3
Chromosome idchr3
Chromosome position8766829
Reported geneOXTR
Mapped geneOXTR
Upstream gene id
Downstream gene id
SNP gene ids5021
Upstream gene distance
Downstream gene distance
SNP risk allelers237899-?
SNPsrs237899
Merged0
SNP id current237899
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.69
%95 Ci[1.36-2.10]
PlatformIllumina [876476]
CNVN
Mapped traitalcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST001313