SNP Detail For rs2358944
1.Mapping Information
Human SNP ID rs2358944
Human chromosome chr12
Human SNP position 65723778
Pig chromosome JH118649-1
Pig SNP position 202786
2.Annotation Information
PubMed ID21150874
JournalKidney Int
Linkwww.ncbi.nlm.nih.gov/pubmed/21150874
StudyA genome-wide association study for diabetic nephropathy genes in African Americans.
Disease/TraitType 2 diabetes nephropathy
Initial sample965 African American cases, 1,029 African American controls
Replication sample709 African American cases, 690 African American controls
Region12q14.3
Chromosome idchr12
Chromosome position65723778
Reported geneHMGA2, MSRB3
Mapped genePCNPP3 - RPSAP52
Upstream gene id729298
Downstream gene id204010
SNP gene ids
Upstream gene distance77302
Downstream gene distance34242
SNP risk allelers2358944-G
SNPsrs2358944
Merged0
SNP id current2358944
Contextintergenic_variant
Intergenic1
Allele frequency0.77
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.33
%95 Ci[1.18-1.49]
PlatformAffymetrix [832357]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST000909