Human SNP ID | rs2358944 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65723778 |
Pig chromosome | JH118649-1 |
Pig SNP position | 202786 |
PubMed ID | 21150874 |
---|---|
Journal | Kidney Int |
Link | www.ncbi.nlm.nih.gov/pubmed/21150874 |
Study | A genome-wide association study for diabetic nephropathy genes in African Americans. |
Disease/Trait | Type 2 diabetes nephropathy |
Initial sample | 965 African American cases, 1,029 African American controls |
Replication sample | 709 African American cases, 690 African American controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65723778 |
Reported gene | HMGA2, MSRB3 |
Mapped gene | PCNPP3 - RPSAP52 |
Upstream gene id | 729298 |
Downstream gene id | 204010 |
SNP gene ids | |
Upstream gene distance | 77302 |
Downstream gene distance | 34242 |
SNP risk allele | rs2358944-G |
SNPs | rs2358944 |
Merged | 0 |
SNP id current | 2358944 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.77 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.18-1.49] |
Platform | Affymetrix [832357] |
CNV | N |
Mapped trait | diabetic nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000401 |
Study accession | GCST000909 |