SNP Detail For rs2335704
1.Mapping Information
Human SNP ID rs2335704
Human chromosome chr2
Human SNP position 205000109
Pig chromosome chr15
Pig SNP position 119773628
2.Annotation Information
PubMed ID20694014
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20694014
StudyGenome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.
Disease/TraitTuberculosis
Initial sample2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls
Replication sample1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls
Region2q33.3
Chromosome idchr2
Chromosome position205000109
Reported geneintergenic
Mapped genePARD3B
Upstream gene id
Downstream gene id
SNP gene ids117583
Upstream gene distance
Downstream gene distance
SNP risk allelers2335704-C
SNPsrs2335704
Merged0
SNP id current2335704
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.19
%95 Ci[1.10-1.30]
PlatformAffymetrix [> 333754] (imputed)
CNVN
Mapped traitTuberculosis
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_3389
Study accessionGCST000764