Human SNP ID | rs2335704 |
---|---|
Human chromosome | chr2 |
Human SNP position | 205000109 |
Pig chromosome | chr15 |
Pig SNP position | 119773628 |
PubMed ID | 20694014 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694014 |
Study | Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2. |
Disease/Trait | Tuberculosis |
Initial sample | 2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls |
Replication sample | 1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls |
Region | 2q33.3 |
Chromosome id | chr2 |
Chromosome position | 205000109 |
Reported gene | intergenic |
Mapped gene | PARD3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 117583 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2335704-C |
SNPs | rs2335704 |
Merged | 0 |
SNP id current | 2335704 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.10-1.30] |
Platform | Affymetrix [> 333754] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST000764 |