SNP Detail For rs2328546
1.Mapping Information
Human SNP ID rs2328546
Human chromosome chr6
Human SNP position 20657114
Pig chromosome chr7
Pig SNP position 16929050
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position20657114
Reported geneNR
Mapped geneCDKAL1
Upstream gene id
Downstream gene id
SNP gene ids54901
Upstream gene distance
Downstream gene distance
SNP risk allelers2328546-?
SNPsrs2328546
Merged
SNP id current2328546
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000000001
Pvalue mlog13
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043