SNP Detail For rs2328223
1.Mapping Information
Human SNP ID rs2328223
Human chromosome chr20
Human SNP position 17865277
Pig chromosome chr17
Pig SNP position 29713723
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitLDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region20p12.1
Chromosome idchr20
Chromosome position17865277
Reported geneSNX5
Mapped geneBANF2 - LOC105372548
Upstream gene id140836
Downstream gene id105372548
SNP gene ids
Upstream gene distance129405
Downstream gene distance7359
SNP risk allelers2328223-C
SNPsrs2328223
Merged0
SNP id current2328223
Contextintergenic_variant
Intergenic1
Allele frequency0.21
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.03
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002222