Human SNP ID | rs2328223 |
---|---|
Human chromosome | chr20 |
Human SNP position | 17865277 |
Pig chromosome | chr17 |
Pig SNP position | 29713723 |
PubMed ID | 24097068 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 17865277 |
Reported gene | SNX5 |
Mapped gene | BANF2 - LOC105372548 |
Upstream gene id | 140836 |
Downstream gene id | 105372548 |
SNP gene ids | |
Upstream gene distance | 129405 |
Downstream gene distance | 7359 |
SNP risk allele | rs2328223-C |
SNPs | rs2328223 |
Merged | 0 |
SNP id current | 2328223 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 0.03 |
%95 Ci | [NR] unit increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002222 |