SNP Detail For rs2326458
1.Mapping Information
Human SNP ID rs2326458
Human chromosome chr16
Human SNP position 84954073
Pig chromosome chr6
Pig SNP position 4319713
2.Annotation Information
PubMed ID18391951
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391951
StudyMany sequence variants affecting diversity of adult human height.
Disease/TraitHeight
Initial sample30,968 European ancestry individuals
Replication sample8,541 European ancestry individuals
Region16q24.1
Chromosome idchr16
Chromosome position84954073
Reported geneZDHHC7, CRISPLD2, USP10
Mapped geneLOC105371379 - ZDHHC7
Upstream gene id105371379
Downstream gene id55625
SNP gene ids
Upstream gene distance11017
Downstream gene distance20387
SNP risk allelers2326458-C
SNPsrs2326458
Merged0
SNP id current2326458
Contextintergenic_variant
Intergenic1
Allele frequency0.26
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta5.1
%95 Ci[3.14-7.06] % s.d. increase
PlatformAffymetrix, Illumina [up to 304226]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000175
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region16q24.1
Chromosome idchr16
Chromosome position84954073
Reported geneZDHHC7
Mapped geneLOC105371379 - ZDHHC7
Upstream gene id105371379
Downstream gene id55625
SNP gene ids
Upstream gene distance11017
Downstream gene distance20387
SNP risk allelers2326458-A
SNPsrs2326458
Merged0
SNP id current2326458
Contextintergenic_variant
Intergenic1
Allele frequency0.751
P value0.0000000005
Pvalue mlog9.30102999566398
P value text
Or beta0.022
%95 Ci[0.014-0.03] unit decrease
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647