SNP Detail For rs2326017
1.Mapping Information
Human SNP ID rs2326017
Human chromosome chr17
Human SNP position 48643203
Pig chromosome chr12
Pig SNP position 24826418
2.Annotation Information
PubMed ID19734545
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19734545
StudyA genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
Disease/TraitCognitive performance
Initial sampleUp to 1,295 individuals
Replication sampleNA
Region17q21.32
Chromosome idchr17
Chromosome position48643203
Reported geneAC103702.3
Mapped geneLOC105371809, LOC101060400
Upstream gene id
Downstream gene id
SNP gene ids105371809, 101060400
Upstream gene distance
Downstream gene distance
SNP risk allelers2326017-?
SNPsrs2326017
Merged0
SNP id current2326017
Contextintron_variant
Intergenic0
Allele frequency0.2985
P value0.0000003
Pvalue mlog6.52287874528033
P value text(SWM strategy)
Or beta
%95 Ci
PlatformIllumina [475971]
CNVN
Mapped traitneuropsychological test
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003926
Study accessionGCST000477
PubMed ID23517042
JournalClin Exp Allergy
Linkwww.ncbi.nlm.nih.gov/pubmed/23517042
StudyGenome-wide association study of body mass index in 23 000 individuals with and without asthma.
Disease/TraitBody mass index in non-asthmatics
Initial sample6,025 European ancestry children, 567 children, 6,334 European ancestry adult individuals, 2,050 adult individuals
Replication sampleNA
Region17q21.32
Chromosome idchr17
Chromosome position48643203
Reported geneintergenic
Mapped geneLOC105371809, LOC101060400
Upstream gene id
Downstream gene id
SNP gene ids105371809, 101060400
Upstream gene distance
Downstream gene distance
SNP risk allelers2326017-T
SNPsrs2326017
Merged0
SNP id current2326017
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.000002
Pvalue mlog5.69897000433601
P value text(Children)
Or beta
%95 Ci
PlatformIllumina [up to 527642]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001935