Human SNP ID | rs2312236 |
---|---|
Human chromosome | chr1 |
Human SNP position | 166824980 |
Pig chromosome | chr4 |
Pig SNP position | 91932798 |
PubMed ID | 25456346 |
---|---|
Journal | Psychoneuroendocrinology |
Link | www.ncbi.nlm.nih.gov/pubmed/25456346 |
Study | Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene. |
Disease/Trait | Post-traumatic stress disorder |
Initial sample | 940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls |
Replication sample | 313 European ancestry cases, 178 European ancestry trauma-exposed controls |
Region | 1q24.1 |
Chromosome id | chr1 |
Chromosome position | 166824980 |
Reported gene | POGK |
Mapped gene | CNN2P10 - POGK |
Upstream gene id | 646693 |
Downstream gene id | 57645 |
SNP gene ids | |
Upstream gene distance | 27642 |
Downstream gene distance | 14469 |
SNP risk allele | rs2312236-T |
SNPs | rs2312236 |
Merged | 0 |
SNP id current | 2312236 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.056 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Hispanic) |
Or beta | 3.31 |
%95 Ci | [2.81-3.81] |
Platform | Illumina [21693469] (imputed) |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002681 |