SNP Detail For rs2312236
1.Mapping Information
Human SNP ID rs2312236
Human chromosome chr1
Human SNP position 166824980
Pig chromosome chr4
Pig SNP position 91932798
2.Annotation Information
PubMed ID25456346
JournalPsychoneuroendocrinology
Linkwww.ncbi.nlm.nih.gov/pubmed/25456346
StudyGenomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.
Disease/TraitPost-traumatic stress disorder
Initial sample940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls
Replication sample313 European ancestry cases, 178 European ancestry trauma-exposed controls
Region1q24.1
Chromosome idchr1
Chromosome position166824980
Reported genePOGK
Mapped geneCNN2P10 - POGK
Upstream gene id646693
Downstream gene id57645
SNP gene ids
Upstream gene distance27642
Downstream gene distance14469
SNP risk allelers2312236-T
SNPsrs2312236
Merged0
SNP id current2312236
Contextintergenic_variant
Intergenic1
Allele frequency0.056
P value0.000003
Pvalue mlog5.52287874528033
P value text(Hispanic)
Or beta3.31
%95 Ci[2.81-3.81]
PlatformIllumina [21693469] (imputed)
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002681