SNP Detail For rs2306658
1.Mapping Information
Human SNP ID rs2306658
Human chromosome chr17
Human SNP position 36949012
Pig chromosome chr12
Pig SNP position 40078775
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region17q12
Chromosome idchr17
Chromosome position36949012
Reported geneAATF
Mapped geneAATF
Upstream gene id
Downstream gene id
SNP gene ids26574
Upstream gene distance
Downstream gene distance
SNP risk allelers2306658-G
SNPsrs2306658
Merged0
SNP id current2306658
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.249
P value0.000002
Pvalue mlog5.69897000433601
P value text(Fat mass )
Or beta0.03
%95 Ci[NR] % increase
PlatformIllumina [899892]
CNVN
Mapped traitbody composition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005106
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region17q12
Chromosome idchr17
Chromosome position36949012
Reported geneAATF
Mapped geneAATF
Upstream gene id
Downstream gene id
SNP gene ids26574
Upstream gene distance
Downstream gene distance
SNP risk allelers2306658-G
SNPsrs2306658
Merged0
SNP id current2306658
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.249
P value0.000009
Pvalue mlog5.04575749056067
P value text(Hip circumference )
Or beta0.02
%95 Ci[NR] cm increase
PlatformIllumina [899892]
CNVN
Mapped traithip circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005093
Study accessionGCST001762