Human SNP ID | rs2300478 |
---|---|
Human chromosome | chr2 |
Human SNP position | 66554321 |
Pig chromosome | chr3 |
Pig SNP position | 79170555 |
PubMed ID | 17637780 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17637780 |
Study | Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions. |
Disease/Trait | Restless legs syndrome |
Initial sample | 401 European ancestry cases, 1,644 European ancestry controls |
Replication sample | 906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 66554321 |
Reported gene | MEIS1 |
Mapped gene | MEIS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4211 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2300478-G |
SNPs | rs2300478 |
Merged | 0 |
SNP id current | 2300478 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 3E-28 |
Pvalue mlog | 27.5228787452803 |
P value text | |
Or beta | 1.74 |
%95 Ci | [1.57-1.92] |
Platform | Affymetrix [236758] |
CNV | N |
Mapped trait | restless legs syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004270 |
Study accession | GCST000056 |
PubMed ID | 21779176 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21779176 |
Study | Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1. |
Disease/Trait | Restless legs syndrome |
Initial sample | 922 European ancestry cases, 1,526 European ancestry controls |
Replication sample | 3,935 European ancestry cases, 5,754 European ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 66554321 |
Reported gene | MEIS1 |
Mapped gene | MEIS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4211 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2300478-G |
SNPs | rs2300478 |
Merged | 0 |
SNP id current | 2300478 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 3E-49 |
Pvalue mlog | 48.5228787452803 |
P value text | |
Or beta | 1.68 |
%95 Ci | [1.57-1.81] |
Platform | Affymetrix [301406] |
CNV | N |
Mapped trait | restless legs syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004270 |
Study accession | GCST001159 |