SNP Detail For rs2299116
1.Mapping Information
Human SNP ID rs2299116
Human chromosome chr7
Human SNP position 28775622
Pig chromosome chr18
Pig SNP position 48294382
2.Annotation Information
PubMed ID25436638
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25436638
StudyGenetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network.
Disease/TraitSerum thyroid-stimulating hormone levels
Initial sample4,501 European ancestry individuals, 351 African American individuals
Replication sampleNA
Region7p15.1
Chromosome idchr7
Chromosome position28775622
Reported geneCREB5
Mapped geneCREB5
Upstream gene id
Downstream gene id
SNP gene ids9586
Upstream gene distance
Downstream gene distance
SNP risk allelers2299116-A
SNPsrs2299116
Merged0
SNP id current2299116
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.000008
Pvalue mlog5.09691001300805
P value text(AA)
Or beta0.25
%95 Ci[0.13-0.37] unit increase
PlatformIllumina [up to 905285]
CNVN
Mapped traitthyroid stimulating hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004748
Study accessionGCST002707