SNP Detail For rs2297991
1.Mapping Information
Human SNP ID rs2297991
Human chromosome chr10
Human SNP position 112153464
Pig chromosome chr14
Pig SNP position 133476834
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region10q25.2
Chromosome idchr10
Chromosome position112153464
Reported geneGPAM
Mapped geneGPAM
Upstream gene id
Downstream gene id
SNP gene ids57678
Upstream gene distance
Downstream gene distance
SNP risk allelers2297991-T
SNPsrs2297991
Merged
SNP id current2297991
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.28
P value0.0000000008
Pvalue mlog9.09691001300805
P value text
Or beta0.042
%95 Ci[0.028-0.056] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896