Human SNP ID | rs2297991 |
---|---|
Human chromosome | chr10 |
Human SNP position | 112153464 |
Pig chromosome | chr14 |
Pig SNP position | 133476834 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 10q25.2 |
Chromosome id | chr10 |
Chromosome position | 112153464 |
Reported gene | GPAM |
Mapped gene | GPAM |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57678 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2297991-T |
SNPs | rs2297991 |
Merged | |
SNP id current | 2297991 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.0000000008 |
Pvalue mlog | 9.09691001300805 |
P value text | |
Or beta | 0.042 |
%95 Ci | [0.028-0.056] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |