SNP Detail For rs2295602
1.Mapping Information
Human SNP ID rs2295602
Human chromosome chr6
Human SNP position 11005609
Pig chromosome chr7
Pig SNP position 8009814
2.Annotation Information
PubMed ID26068415
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26068415
StudyGenome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.
Disease/TraitGlycerophospholipid levels
Initial sampleup to 7,478 European ancestry individuals
Replication sample1,182 European ancestry individuals
Region6p24.2
Chromosome idchr6
Chromosome position11005609
Reported geneELOVL2
Mapped geneELOVL2
Upstream gene id
Downstream gene id
SNP gene ids54898
Upstream gene distance
Downstream gene distance
SNP risk allelers2295602-T
SNPsrs2295602
Merged
SNP id current2295602
Contextintron_variant
Intergenic0
Allele frequency0.5715
P value7E-19
Pvalue mlog18.1549019599857
P value text(Phosphatidylcholine diacyl C42:5)
Or beta0.0432
%95 Ci[0.034-0.053] unit increase
PlatformAffymetrix, Illumina [at least 296619] (imputed)
CNVN
Mapped traitglycerophospholipid measurement, blood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007630, http://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002965
PubMed ID26068415
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26068415
StudyGenome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.
Disease/TraitGlycerophospholipid levels
Initial sampleup to 7,478 European ancestry individuals
Replication sample1,182 European ancestry individuals
Region6p24.2
Chromosome idchr6
Chromosome position11005609
Reported geneELOVL2
Mapped geneELOVL2
Upstream gene id
Downstream gene id
SNP gene ids54898
Upstream gene distance
Downstream gene distance
SNP risk allelers2295602-T
SNPsrs2295602
Merged
SNP id current2295602
Contextintron_variant
Intergenic0
Allele frequency0.5715
P value0.0000000000002
Pvalue mlog12.698970004336
P value text(Phosphatidylcholine diacyl C42:6)
Or beta0.0288
%95 Ci[0.021-0.036] unit increase
PlatformAffymetrix, Illumina [at least 296619] (imputed)
CNVN
Mapped traitglycerophospholipid measurement, blood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007630, http://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002965