Human SNP ID | rs2295602 |
---|---|
Human chromosome | chr6 |
Human SNP position | 11005609 |
Pig chromosome | chr7 |
Pig SNP position | 8009814 |
PubMed ID | 26068415 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26068415 |
Study | Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels. |
Disease/Trait | Glycerophospholipid levels |
Initial sample | up to 7,478 European ancestry individuals |
Replication sample | 1,182 European ancestry individuals |
Region | 6p24.2 |
Chromosome id | chr6 |
Chromosome position | 11005609 |
Reported gene | ELOVL2 |
Mapped gene | ELOVL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54898 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2295602-T |
SNPs | rs2295602 |
Merged | |
SNP id current | 2295602 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5715 |
P value | 7E-19 |
Pvalue mlog | 18.1549019599857 |
P value text | (Phosphatidylcholine diacyl C42:5) |
Or beta | 0.0432 |
%95 Ci | [0.034-0.053] unit increase |
Platform | Affymetrix, Illumina [at least 296619] (imputed) |
CNV | N |
Mapped trait | glycerophospholipid measurement, blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007630, http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002965 |
PubMed ID | 26068415 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26068415 |
Study | Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels. |
Disease/Trait | Glycerophospholipid levels |
Initial sample | up to 7,478 European ancestry individuals |
Replication sample | 1,182 European ancestry individuals |
Region | 6p24.2 |
Chromosome id | chr6 |
Chromosome position | 11005609 |
Reported gene | ELOVL2 |
Mapped gene | ELOVL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54898 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2295602-T |
SNPs | rs2295602 |
Merged | |
SNP id current | 2295602 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5715 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | (Phosphatidylcholine diacyl C42:6) |
Or beta | 0.0288 |
%95 Ci | [0.021-0.036] unit increase |
Platform | Affymetrix, Illumina [at least 296619] (imputed) |
CNV | N |
Mapped trait | glycerophospholipid measurement, blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007630, http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002965 |