SNP Detail For rs229526
1.Mapping Information
Human SNP ID rs229526
Human chromosome chr22
Human SNP position 37185382
Pig chromosome chr5
Pig SNP position 8199701
2.Annotation Information
PubMed ID22493691
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22493691
StudyNovel associations for hypothyroidism include known autoimmune risk loci.
Disease/TraitHypothyroidism
Initial sample3,736 European ancestry cases, 35,546 European ancestry controls
Replication sampleNA
Region22q12.3
Chromosome idchr22
Chromosome position37185382
Reported geneC1QTNF6
Mapped geneC1QTNF6
Upstream gene id
Downstream gene id
SNP gene ids114904
Upstream gene distance
Downstream gene distance
SNP risk allelers229526-C
SNPsrs229526
Merged0
SNP id current229526
Contextmissense_variant
Intergenic0
Allele frequency0.221
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.216
%95 Ci[1.12-1.32]
PlatformIllumina [870065]
CNVN
Mapped traithypothyroidism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004705
Study accessionGCST001474