SNP Detail For rs2293582
1.Mapping Information
Human SNP ID rs2293582
Human chromosome chr15
Human SNP position 32718211
Pig chromosome chr1
Pig SNP position 152737555
2.Annotation Information
PubMed ID25990418
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/25990418
StudyA new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.
Disease/TraitColorectal cancer
Initial sample7,577 European ancestry cases, 9,979 European ancestry controls
Replication sampleNA
Region15q13.3
Chromosome idchr15
Chromosome position32718211
Reported geneGREM1, SCG5
Mapped geneGREM1, LOC100131315
Upstream gene id
Downstream gene id
SNP gene ids26585, 100131315
Upstream gene distance
Downstream gene distance
SNP risk allelers2293582-A
SNPsrs2293582
Merged0
SNP id current2293582
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.21
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.21
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 10000000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002919