Human SNP ID | rs2293582 |
---|---|
Human chromosome | chr15 |
Human SNP position | 32718211 |
Pig chromosome | chr1 |
Pig SNP position | 152737555 |
PubMed ID | 25990418 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/25990418 |
Study | A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 7,577 European ancestry cases, 9,979 European ancestry controls |
Replication sample | NA |
Region | 15q13.3 |
Chromosome id | chr15 |
Chromosome position | 32718211 |
Reported gene | GREM1, SCG5 |
Mapped gene | GREM1, LOC100131315 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26585, 100131315 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2293582-A |
SNPs | rs2293582 |
Merged | 0 |
SNP id current | 2293582 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.21 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 10000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002919 |