SNP Detail For rs2293579
1.Mapping Information
Human SNP ID rs2293579
Human chromosome chr11
Human SNP position 47419207
Pig chromosome chr2
Pig SNP position 16397403
2.Annotation Information
PubMed ID23022100
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23022100
StudyDiscovery and fine mapping of serum protein loci through transethnic meta-analysis.
Disease/TraitSerum albumin level
Initial sampleUp to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals
Replication sampleNA
Region11p11.2
Chromosome idchr11
Chromosome position47419207
Reported genePSMC3
Mapped genePSMC3
Upstream gene id
Downstream gene id
SNP gene ids5702
Upstream gene distance
Downstream gene distance
SNP risk allelers2293579-A
SNPsrs2293579
Merged0
SNP id current2293579
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.00000008
Pvalue mlog7.09691001300805
P value text(EA)
Or beta0.0093
%95 Ci[0.0060-0.0126] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitserum albumin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004535
Study accessionGCST001699
PubMed ID23022100
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23022100
StudyDiscovery and fine mapping of serum protein loci through transethnic meta-analysis.
Disease/TraitSerum albumin level
Initial sampleUp to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals
Replication sampleNA
Region11p11.2
Chromosome idchr11
Chromosome position47419207
Reported genePSMC3
Mapped genePSMC3
Upstream gene id
Downstream gene id
SNP gene ids5702
Upstream gene distance
Downstream gene distance
SNP risk allelers2293579-A
SNPsrs2293579
Merged0
SNP id current2293579
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.0000001
Pvalue mlog7
P value text
Or beta0.0086
%95 Ci[0.0055-0.0117] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitserum albumin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004535
Study accessionGCST001699