SNP Detail For rs2292342
1.Mapping Information
Human SNP ID rs2292342
Human chromosome chr19
Human SNP position 48615114
Pig chromosome chr6
Pig SNP position 49721369
2.Annotation Information
PubMed ID24941225
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24941225
StudyGenetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.
Disease/TraitElevated serum carcinoembryonic antigen levels
Initial sample1,999 Chinese ancestry individuals
Replication sampleNA
Region19q13.33
Chromosome idchr19
Chromosome position48615114
Reported geneRPL18
Mapped geneFAM83E - RPL18
Upstream gene id54854
Downstream gene id6141
SNP gene ids
Upstream gene distance273
Downstream gene distance213
SNP risk allelers2292342-?
SNPsrs2292342
Merged0
SNP id current2292342
Contextupstream_gene_variant
Intergenic1
Allele frequency
P value0.000000000007
Pvalue mlog11.1549019599857
P value text
Or beta
%95 Ci
PlatformIllumina [709211] (imputed)
CNVN
Mapped traitserum carcinoembryonic antigen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005760
Study accessionGCST002485