Human SNP ID | rs2292342 |
---|---|
Human chromosome | chr19 |
Human SNP position | 48615114 |
Pig chromosome | chr6 |
Pig SNP position | 49721369 |
PubMed ID | 24941225 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24941225 |
Study | Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. |
Disease/Trait | Elevated serum carcinoembryonic antigen levels |
Initial sample | 1,999 Chinese ancestry individuals |
Replication sample | NA |
Region | 19q13.33 |
Chromosome id | chr19 |
Chromosome position | 48615114 |
Reported gene | RPL18 |
Mapped gene | FAM83E - RPL18 |
Upstream gene id | 54854 |
Downstream gene id | 6141 |
SNP gene ids | |
Upstream gene distance | 273 |
Downstream gene distance | 213 |
SNP risk allele | rs2292342-? |
SNPs | rs2292342 |
Merged | 0 |
SNP id current | 2292342 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000000000007 |
Pvalue mlog | 11.1549019599857 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [709211] (imputed) |
CNV | N |
Mapped trait | serum carcinoembryonic antigen measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005760 |
Study accession | GCST002485 |