SNP Detail For rs2290854
1.Mapping Information
Human SNP ID rs2290854
Human chromosome chr1
Human SNP position 204546897
Pig chromosome chr9
Pig SNP position 71544066
2.Annotation Information
PubMed ID23544013
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23544013
StudyGenome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.
Disease/TraitBreast Cancer in BRCA1 mutation carriers
Initial sample1,426 European ancestry cases, 1,301 European ancestry controls
Replication sample6,031 European ancestry cases, 5,933 European ancestry controls
Region1q32.1
Chromosome idchr1
Chromosome position204546897
Reported geneMDM4
Mapped geneMDM4
Upstream gene id
Downstream gene id
SNP gene ids4194
Upstream gene distance
Downstream gene distance
SNP risk allelers2290854-A
SNPsrs2290854
Merged0
SNP id current2290854
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.0000001
Pvalue mlog7
P value text
Or beta1.13
%95 Ci[1.08-1.18]
PlatformIllumina [2568349] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001916