Human SNP ID | rs2290854 |
---|---|
Human chromosome | chr1 |
Human SNP position | 204546897 |
Pig chromosome | chr9 |
Pig SNP position | 71544066 |
PubMed ID | 23544013 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23544013 |
Study | Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk. |
Disease/Trait | Breast Cancer in BRCA1 mutation carriers |
Initial sample | 1,426 European ancestry cases, 1,301 European ancestry controls |
Replication sample | 6,031 European ancestry cases, 5,933 European ancestry controls |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 204546897 |
Reported gene | MDM4 |
Mapped gene | MDM4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4194 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2290854-A |
SNPs | rs2290854 |
Merged | 0 |
SNP id current | 2290854 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.08-1.18] |
Platform | Illumina [2568349] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001916 |