Human SNP ID | rs2290720 |
---|---|
Human chromosome | chr12 |
Human SNP position | 101293265 |
Pig chromosome | chr5 |
Pig SNP position | 86894878 |
PubMed ID | 20197096 |
---|---|
Journal | Neuroimage |
Link | www.ncbi.nlm.nih.gov/pubmed/20197096 |
Study | Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer__s disease. |
Disease/Trait | Brain structure (hippocampal volume) |
Initial sample | 162 European ancestry Alzheimer__s disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls |
Replication sample | NA |
Region | 12q23.2 |
Chromosome id | chr12 |
Chromosome position | 101293265 |
Reported gene | UTP20 |
Mapped gene | UTP20 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27340 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2290720-G |
SNPs | rs2290720 |
Merged | 0 |
SNP id current | 2290720 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 148.1 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [546314] |
CNV | N |
Mapped trait | brain measurement, hippocampal volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004464, http://www.ebi.ac.uk/efo/EFO_0005035 |
Study accession | GCST000615 |