SNP Detail For rs2290720
1.Mapping Information
Human SNP ID rs2290720
Human chromosome chr12
Human SNP position 101293265
Pig chromosome chr5
Pig SNP position 86894878
2.Annotation Information
PubMed ID20197096
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/20197096
StudyGenome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer__s disease.
Disease/TraitBrain structure (hippocampal volume)
Initial sample162 European ancestry Alzheimer__s disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls
Replication sampleNA
Region12q23.2
Chromosome idchr12
Chromosome position101293265
Reported geneUTP20
Mapped geneUTP20
Upstream gene id
Downstream gene id
SNP gene ids27340
Upstream gene distance
Downstream gene distance
SNP risk allelers2290720-G
SNPsrs2290720
Merged0
SNP id current2290720
Contextintron_variant
Intergenic0
Allele frequency0.43
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta148.1
%95 Ci[NR] unit decrease
PlatformIllumina [546314]
CNVN
Mapped traitbrain measurement, hippocampal volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004464, http://www.ebi.ac.uk/efo/EFO_0005035
Study accessionGCST000615