Human SNP ID | rs2289731 |
---|---|
Human chromosome | chr1 |
Human SNP position | 8330828 |
Pig chromosome | chr6 |
Pig SNP position | 63408191 |
PubMed ID | 23468962 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23468962 |
Study | A genome-wide scan for breast cancer risk haplotypes among African American women. |
Disease/Trait | Breast cancer |
Initial sample | 3,016 African American cases, 2,745 African American controls |
Replication sample | NA |
Region | 1p36.23 |
Chromosome id | chr1;1;1;1;1 |
Chromosome position | 8335381;8335500;8326670;8334176;8330828 |
Reported gene | SLC45A1 |
Mapped gene | SLC45A1; SLC45A1; SLC45A1; SLC45A1; SLC45A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2305016-?; rs7535752-?; rs9628987-?; rs12711517-?; rs2289731-? |
SNPs | rs2305016; rs7535752; rs9628987; rs12711517; rs2289731 |
Merged | 0 |
SNP id current | |
Context | intron_variant; missense_variant; intron_variant; intron_variant; synonymous_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.12-1.35] |
Platform | Illumina [1006480] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001879 |