SNP Detail For rs2289700
1.Mapping Information
Human SNP ID rs2289700
Human chromosome chr15
Human SNP position 78932341
Pig chromosome chr7
Pig SNP position 53634137
2.Annotation Information
PubMed ID21771265
JournalGenes Brain Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/21771265
StudyGenome-wide association study on bipolar disorder in the Bulgarian population.
Disease/TraitBipolar disorder
Initial sample188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls
Replication sample122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls
Region15q25.1
Chromosome idchr15
Chromosome position78932341
Reported geneCTSH
Mapped geneCTSH
Upstream gene id
Downstream gene id
SNP gene ids1512
Upstream gene distance
Downstream gene distance
SNP risk allelers2289700-A
SNPsrs2289700
Merged0
SNP id current2289700
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta2.13
%95 Ci[1.53-2.95]
PlatformIllumina [497732]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001164