Human SNP ID | rs2288912 |
---|---|
Human chromosome | chr19 |
Human SNP position | 44945942 |
Pig chromosome | chr6 |
Pig SNP position | 47285925 |
PubMed ID | 25378659 |
---|---|
Journal | J Lipid Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25378659 |
Study | Genetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids. |
Disease/Trait | Very long-chain saturated fatty acid levels (fatty acid 20:0) |
Initial sample | 10,129 European ancestry individuals |
Replication sample | NA |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44945942 |
Reported gene | APOC2, CLPTM1, APOE, APOC4 |
Mapped gene | APOC4-APOC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100533990 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2288912-C |
SNPs | rs2288912 |
Merged | 0 |
SNP id current | 2288912 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 4.617 |
%95 Ci | [NR] Z score increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | very long-chain saturated fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006796 |
Study accession | GCST002690 |