SNP Detail For rs2288912
1.Mapping Information
Human SNP ID rs2288912
Human chromosome chr19
Human SNP position 44945942
Pig chromosome chr6
Pig SNP position 47285925
2.Annotation Information
PubMed ID25378659
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25378659
StudyGenetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
Disease/TraitVery long-chain saturated fatty acid levels (fatty acid 20:0)
Initial sample10,129 European ancestry individuals
Replication sampleNA
Region19q13.32
Chromosome idchr19
Chromosome position44945942
Reported geneAPOC2, CLPTM1, APOE, APOC4
Mapped geneAPOC4-APOC2
Upstream gene id
Downstream gene id
SNP gene ids100533990
Upstream gene distance
Downstream gene distance
SNP risk allelers2288912-C
SNPsrs2288912
Merged0
SNP id current2288912
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta4.617
%95 Ci[NR] Z score increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvery long-chain saturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006796
Study accessionGCST002690