Human SNP ID | rs228836 |
---|---|
Human chromosome | chr20 |
Human SNP position | 51449111 |
Pig chromosome | chr17 |
Pig SNP position | 59242758 |
PubMed ID | 25865494 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25865494 |
Study | Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development. |
Disease/Trait | Sitting height ratio |
Initial sample | 3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men |
Replication sample | NA |
Region | 20q13.2 |
Chromosome id | chr20 |
Chromosome position | 51449111 |
Reported gene | NFATC2 |
Mapped gene | NFATC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4773 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs228836-G |
SNPs | rs228836 |
Merged | 0 |
SNP id current | 228836 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.411 |
P value | 0.0000000008 |
Pvalue mlog | 9.09691001300805 |
P value text | (EA) |
Or beta | 0.061 |
%95 Ci | [0.041-0.081] unit increase |
Platform | Affymetrix, Illumina [up to 10250422] (imputed) |
CNV | N |
Mapped trait | sitting height ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007118 |
Study accession | GCST002843 |