SNP Detail For rs228836
1.Mapping Information
Human SNP ID rs228836
Human chromosome chr20
Human SNP position 51449111
Pig chromosome chr17
Pig SNP position 59242758
2.Annotation Information
PubMed ID25865494
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25865494
StudyGenome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.
Disease/TraitSitting height ratio
Initial sample3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men
Replication sampleNA
Region20q13.2
Chromosome idchr20
Chromosome position51449111
Reported geneNFATC2
Mapped geneNFATC2
Upstream gene id
Downstream gene id
SNP gene ids4773
Upstream gene distance
Downstream gene distance
SNP risk allelers228836-G
SNPsrs228836
Merged0
SNP id current228836
Contextintron_variant
Intergenic0
Allele frequency0.411
P value0.0000000008
Pvalue mlog9.09691001300805
P value text(EA)
Or beta0.061
%95 Ci[0.041-0.081] unit increase
PlatformAffymetrix, Illumina [up to 10250422] (imputed)
CNVN
Mapped traitsitting height ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007118
Study accessionGCST002843