SNP Detail For rs2288059
1.Mapping Information
Human SNP ID rs2288059
Human chromosome chr16
Human SNP position 76136198
Pig chromosome chr6
Pig SNP position 11536654
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitDelta-5 desaturase activity
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region16q23.1
Chromosome idchr16
Chromosome position76136198
Reported geneNR
Mapped geneLOC105371349 - RPL18P13
Upstream gene id105371349
Downstream gene id441775
SNP gene ids
Upstream gene distance14390
Downstream gene distance98819
SNP risk allelers2288059-T
SNPsrs2288059
Merged
SNP id current2288059
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequency0.8501
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.0908
%95 Ci[0.051-0.13] unit increase
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003243